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|  | News |
| | | The Linnaeus Centre for Bioinformatics has launched
the data warehouse for storing, managing and analyzing gene expression data.
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| | LCB-DWH |
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The LCB Data WareHouse (LCB-DWH) is a microarray-experiment oriented warehouse
for collections of expression data, integrated with gene annotation profiling
and used to support genomic data mining processes. It provides means to access
and extract valuable information from a Laboratory Information Management System
(LIMS) and makes use of several plug-ins to process and analyze the data.
The system consists of two parts: MIAME compliant data storage is handled by the
LIMS while data analysis is performed in the DWH. The core of the system is
BASE. Accessing LIMS and DWH is accomplished through secure connections and the
links are, respectively:
base.lcb.uu.se
dw.lcb.uu.se
The results from pre-loaded publically available experiments can be seen when
logged in from
here.
There is also a test account available in the DWH part of the system that allows
executing all plug-ins on pre-loaded publically available datasets. Click
here
to login to the test area. All results created in that area are temporary and
will be removed by an automatic procedure launched monthly. When logged in as
the test user, it is recommended to follow the steps in the data analysis
user guide.
The instructions for obtaining a personal/group account can be found
here
In order to find more information about BASE visit:
http://base.thep.lu.se
The LCB-DWH is supported by grants from the Wallenberg Consortium North (WCN)
and from the Knut and Alice Wallenberg foundation
To cite the LCB-DWH, please use:
Adam Ameur, Vladimir Yankovski, Stefan Enroth, Ola Spjuth, and Jan Komorowski. The LCB Data Warehouse, Bioinformatics 2006 Apr 15;22(8):1024-6.
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© 2004. The Linnaeus Centre for Bioinformatics |
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